HL_1Q81_064

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

GUUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q81_064 not in the Motif Atlas

Geometric match to HL_4V90_032

Geometric discrepancy: 0.3777

The information below is about HL_4V90_032

Detailed Annotation

tRNA D-loop

Broad Annotation

No text annotation

Motif group

HL_20811.4

Basepair signature

cWW-cWS-F

Number of instances in this motif group

14

Unit IDs

1Q81|1|A|G|2585
1Q81|1|A|U|2586
1Q81|1|A|U|2587
1Q81|1|A|G|2588
1Q81|1|A|U|2589
1Q81|1|A|U|2590
1Q81|1|A|C|2591
1Q81|1|A|G|2592
1Q81|1|A|C|2593

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 5

minihelix-puromycin

Chain D

50S ribosomal protein L3P

Chain L

50S ribosomal protein L14P