HL_1Q81_068

3D structure

PDB id

1Q81 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of minihelix with 3' puromycin bound to A-site of the 50S ribosomal subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

2.95 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1Q81|1|A|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q81_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0486

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1Q81|1|A|C|2780
1Q81|1|A|U|2781
1Q81|1|A|G|2782
1Q81|1|A|A|2783
1Q81|1|A|A|2784
1Q81|1|A|C|2785
1Q81|1|A|G|2786
1Q81|1|A|C|2787
1Q81|1|A|A|2788
1Q81|1|A|U|2789
1Q81|1|A|C|2790
1Q81|1|A|U|2791
1Q81|1|A|A|2792
1Q81|1|A|A|2793
1Q81|1|A|G|2794

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain G

50S ribosomal protein L6P

Chain K

50S ribosomal protein L13P