HL_1Q82_006

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

1Q82|1|A|A|166

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q82_006 not in the Motif Atlas

Homologous match to HL_4V9F_006

Geometric discrepancy: 0.0621

The information below is about HL_4V9F_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_48677.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1Q82|1|A|G|164
1Q82|1|A|A|165
1Q82|1|A|A|166
1Q82|1|A|A|167
1Q82|1|A|C|168
1Q82|1|A|A|169
1Q82|1|A|U|170
1Q82|1|A|C|171

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 4

50S ribosomal protein L44E

Chain M

50S ribosomal protein L15P

Chain N

L15 Ribosomal Protein