HL_1Q82_010

3D structure

PDB id

1Q82 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of CC-Puromycin bound to the A-site of the 50S ribosomal subunit

Experimental method

X-RAY DIFFRACTION

Resolution

2.98 Å

Loop

Sequence

UUGGAACA

Length

8 nucleotides

Bulged bases

1Q82|1|A|C|318

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q82_010 not in the Motif Atlas

Homologous match to HL_4V9F_010

Geometric discrepancy: 0.0437

The information below is about HL_4V9F_010

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_13999.4

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

24

Unit IDs

1Q82|1|A|U|312
1Q82|1|A|U|313
1Q82|1|A|G|314
1Q82|1|A|G|315
1Q82|1|A|A|316
1Q82|1|A|A|317
1Q82|1|A|C|318
1Q82|1|A|A|319

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L4E

Chain U

50S ribosomal protein L24P

Chain Z

50S ribosomal protein L32E