HL_1Q86_030

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

1Q86|1|A|A|1174

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q86_030 not in the Motif Atlas

Homologous match to HL_4V9F_030

Geometric discrepancy: 0.2113

The information below is about HL_4V9F_030

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_92304.1

Basepair signature

cWW-cSW-R-R-tSH-R-R

Number of instances in this motif group

5

Unit IDs

1Q86|1|A|C|1168
1Q86|1|A|U|1169
1Q86|1|A|U|1170
1Q86|1|A|A|1171
1Q86|1|A|G|1172
1Q86|1|A|A|1173
1Q86|1|A|A|1174
1Q86|1|A|G|1175
1Q86|1|A|C|1176
1Q86|1|A|A|1177
1Q86|1|A|G|1178

Current chains

Chain A

23S ribosomal rna

Nearby chains