HL_1Q86_034
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- GUGAGAACC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1Q86_034 not in the Motif Atlas
- Homologous match to HL_4V9F_034
- Geometric discrepancy: 0.0366
- The information below is about HL_4V9F_034
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
1Q86|1|A|G|1387
1Q86|1|A|U|1388
1Q86|1|A|G|1389
1Q86|1|A|A|1390
1Q86|1|A|G|1391
1Q86|1|A|A|1392
1Q86|1|A|A|1393
1Q86|1|A|C|1394
1Q86|1|A|C|1395
Current chains
- Chain A
- 23S ribosomal rna
Nearby chains
- Chain Q
- 50S ribosomal protein L19E
- Chain S
- 50S ribosomal protein L22P
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