3D structure

PDB id
1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
Experimental method
X-RAY DIFFRACTION
Resolution
3 Å

Loop

Sequence
GUGAGAACC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1Q86_034 not in the Motif Atlas
Homologous match to HL_4V9F_034
Geometric discrepancy: 0.0366
The information below is about HL_4V9F_034
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.9
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
141

Unit IDs

1Q86|1|A|G|1387
1Q86|1|A|U|1388
1Q86|1|A|G|1389
1Q86|1|A|A|1390
1Q86|1|A|G|1391
1Q86|1|A|A|1392
1Q86|1|A|A|1393
1Q86|1|A|C|1394
1Q86|1|A|C|1395

Current chains

Chain A
23S ribosomal rna

Nearby chains

Chain Q
50S ribosomal protein L19E
Chain S
50S ribosomal protein L22P

Coloring options:


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