HL_1Q86_049

3D structure

PDB id

1Q86 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

CGUACAAG

Length

8 nucleotides

Bulged bases

1Q86|1|A|A|1919

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1Q86_049 not in the Motif Atlas

Homologous match to HL_4V9F_049

Geometric discrepancy: 0.0467

The information below is about HL_4V9F_049

Detailed Annotation

GNRA related

Broad Annotation

GNRA related

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

1Q86|1|A|C|1916
1Q86|1|A|G|1917
1Q86|1|A|U|1918
1Q86|1|A|A|1919
1Q86|1|A|C|1920
1Q86|1|A|A|1921
1Q86|1|A|A|1922
1Q86|1|A|G|1923

Current chains

Chain A

23S ribosomal rna

Nearby chains

Chain 4

50S ribosomal protein L44E