HL_1Q86_071
3D structure
- PDB id
- 1Q86 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of CCA-Phe-cap-biotin bound simultaneously at half occupancy to both the A-site and P-site of the the 50S ribosomal Subunit.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3 Å
Loop
- Sequence
- CAUCCCG
- Length
- 7 nucleotides
- Bulged bases
- 1Q86|1|B|C|3040
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1Q86_071 not in the Motif Atlas
- Homologous match to HL_4V9F_071
- Geometric discrepancy: 0.1175
- The information below is about HL_4V9F_071
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_47787.2
- Basepair signature
- cWW-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
1Q86|1|B|C|3037
1Q86|1|B|A|3038
1Q86|1|B|U|3039
1Q86|1|B|C|3040
1Q86|1|B|C|3041
1Q86|1|B|C|3042
1Q86|1|B|G|3043
Current chains
- Chain B
- 5S ribosomal RNA
Nearby chains
- Chain A
- Large subunit ribosomal RNA; LSU rRNA
- Chain F
- 50S ribosomal protein L5P
- Chain O
- 50S ribosomal protein L18P
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