Motif HL_59381.5 Version HL_59381.5 of this group appears in releases 4.14 to 4.14

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Chain(s)	Standardized name for chain		1		2		3		4		5		6	1-6
1	HL_4WF9_066	4WF9	0.2607	1	Y	5S rRNA	C	36	A	37	U	38	C	40	C	41	G	42	cWW
2	HL_4V9F_071	4V9F	0.0990	1	9	5S rRNA	C	37	A	38	U	39	C	41	C	42	G	43	cWW
3	HL_8B0X_097	8B0X	0.0808	1	b	5S rRNA	C	38	A	39	U	40	C	42	C	43	G	44	cWW
4	HL_9DFE_068	9DFE	0.0920	1	1B	5S rRNA	C	38	A	39	U	40	C	42	C	43	G	44	cWW
5	HL_1MJI_002	1MJI	0.0000	1	D	5S rRNA fragment	C	38	A	39	U	40	C	42	C	43	G	44	cWW
6	HL_9E6Q_069	9E6Q	0.1258	0	2	5S rRNA	C	42	A	43	U	44	C	45	A	46	G	47	cWW
7	HL_9H3G_074	9H3G	0.1177	0	C3	5S rRNA	C	36	A	37	U	38	C	39	A	40	G	41	cWW
8	HL_9PN5_071	9PN5	0.1787	0	A3	5S rRNA	C	36	G	37	U	38	C	39	C	40	G	41	cWW
9	HL_9SUM_066	9SUM	0.2154	0	B	5S rRNA	C	37	G	38	U	39	C	40	C	41	G	42	cWW
10	HL_8OI5_069	8OI5	0.1999	0	3	5S rRNA	C	36	G	37	U	38	U	39	C	40	G	41	cWW
11	HL_8QYX_072	8QYX	0.1910	0	B2	5S rRNA	C	36	G	37	U	38	C	39	U	40	G	41	cWW
12	HL_9AXU_069	9AXU	0.2071	0	3	5S rRNA	C	36	G	37	U	38	C	39	C	40	G	41	cWW
13	HL_7A0S_069	7A0S	0.3546	1	Y	5S rRNA	C	40	A	41	U	42	C	44	C	45	G	46	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CAUGCCG	4
CGUCCG	3
CAUCAG	2
CAUCCCG	1
CAUUCCG	1
CGUUCG	1
CGUCUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
AUGCC	4
GUCC	3
AUCA	2
AUCCC	1
AUUCC	1
GUUC	1
GUCU	1

Release history

Release	4.14
Date	2026-09-09
Status	Updated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.

Annotations: (13)
Basepair signature: cWW-F-F-F-F
Heat map statistics: Min 0.06 | Avg 0.20 | Max 0.46

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Coloring options: Nucleotide numbers

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