HL_1QD3_005

3D structure

PDB id

1QD3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

HIV-1 TAR RNA/NEOMYCIN B COMPLEX

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUGGGAG

Length

8 nucleotides

Bulged bases

1QD3|5|A|A|35

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QD3_005 not in the Motif Atlas

Geometric match to HL_4WF9_003

Geometric discrepancy: 0.3555

The information below is about HL_4WF9_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

1QD3|5|A|C|29
1QD3|5|A|C|30
1QD3|5|A|U|31
1QD3|5|A|G|32
1QD3|5|A|G|33
1QD3|5|A|G|34
1QD3|5|A|A|35
1QD3|5|A|G|36

Current chains

Chain A

HIV-1 TAR RNA

Nearby chains