1QD3 Hairpin, Internal, and multi-helix Junction Loop Motifs
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| HL_1QD3_001 | 1/A/29:36 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QD3_002 | 2/A/29:36 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_1QD3_003 | 3/A/29:36 | No text annotation | geometric HL_8C3A_039 NA | |
| HL_1QD3_004 | 4/A/29:36 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_1QD3_005 | 5/A/29:36 | No text annotation | geometric HL_4WF9_003 HL_75660.5 | |
| HL_1QD3_006 | 6/A/29:36 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_1QD3_007 | 7/A/29:36 | No text annotation | ||
| HL_1QD3_008 | 8/A/29:36 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_1QD3_009 | 9/A/29:36 | No text annotation | ||
| HL_1QD3_010 | 10/A/29:36 | No text annotation | geometric HL_2ZZM_002 HL_13963.3 | |
| HL_1QD3_011 | 11/A/29:36 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_1QD3_012 | 12/A/29:36 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 | |
| HL_1QD3_013 | 13/A/29:36 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_1QD3_014 | 14/A/29:36 | No text annotation | geometric HL_2ZNI_001 HL_75660.5 | |
| HL_1QD3_015 | 15/A/29:36 | Mini UNCG | geometric HL_4LFB_005 HL_48778.2 | |
| HL_1QD3_016 | 16/A/29:36 | No text annotation | ||
| HL_1QD3_017 | 17/A/29:36 | Mini UNCG | geometric HL_4YAZ_004 HL_48778.2 |
Problematic loops
No problematic loops
Valid loops
| 3D | Loop id | Location | Annotation; motif group | Mapped info |
|---|---|---|---|---|
| IL_1QD3_001 | 1/A/22:26, 1/A/39:40 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.5 | |
| IL_1QD3_020 | 2/A/22:26, 2/A/39:40 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.5 | |
| IL_1QD3_021 | 3/A/22:26, 3/A/39:40 | Multiple bulged bases | geometric IL_1FUF_003 IL_82107.5 | |
| IL_1QD3_004 | 4/A/22:26, 4/A/39:40 | Multiple bulged bases | geometric IL_1FUF_003 IL_82107.5 | |
| IL_1QD3_005 | 5/A/22:26, 5/A/39:40 | Multiple bulged bases | geometric IL_6IV9_001 IL_82107.5 | |
| IL_1QD3_006 | 6/A/22:26, 6/A/39:40 | Multiple bulged bases | geometric IL_1FUF_003 IL_82107.5 | |
| IL_1QD3_022 | 7/A/22:26, 7/A/39:40 | Multiple bulged bases | geometric IL_1FUF_002 IL_82107.5 | |
| IL_1QD3_023 | 8/A/22:26, 8/A/39:40 | No text annotation | ||
| IL_1QD3_024 | 9/A/22:26, 9/A/39:40 | Multiple bulged bases | geometric IL_1FUF_003 IL_82107.5 | |
| IL_1QD3_010 | 10/A/22:26, 10/A/39:40 | Multiple bulged bases | geometric IL_1FUF_003 IL_82107.5 | |
| IL_1QD3_011 | 11/A/22:26, 11/A/39:40 | Major groove intercalation | geometric IL_1NBS_009 IL_82107.5 | |
| IL_1QD3_012 | 12/A/21:26, 12/A/39:41 | No text annotation | geometric IL_7RQB_083 NA | |
| IL_1QD3_013 | 13/A/21:26, 13/A/39:41 | No text annotation | ||
| IL_1QD3_014 | 14/A/22:26, 14/A/39:40 | Multiple bulged bases | geometric IL_1FUF_003 IL_82107.5 | |
| IL_1QD3_019 | 15/A/22:26, 15/A/39:40 | Multiple bulged bases | geometric IL_7OS0_002 IL_82107.5 | |
| IL_1QD3_016 | 16/A/21:26, 16/A/39:41 | No text annotation | ||
| IL_1QD3_025 | 17/A/22:26, 17/A/39:40 | No text annotation |
Problematic loops
| # | loop id | Problem | Sequence |
|---|---|---|---|
| IL_1QD3_002 | No text annotation | ||
| IL_1QD3_003 | No text annotation | ||
| IL_1QD3_018 | No text annotation | ||
| IL_1QD3_007 | No text annotation | ||
| IL_1QD3_008 | No text annotation | ||
| IL_1QD3_009 | No text annotation | ||
| IL_1QD3_015 | Isolated non-canonical cWW pair | ||
| IL_1QD3_017 | Isolated non-canonical cWW with bulges |
Valid loops
No loops found
Problematic loops
No problematic loops
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