3D structure

PDB id
1QFQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
Bacteriophage Lambda N-protein-NutboxB-RNA Complex
Experimental method
SOLUTION NMR
Resolution

Loop

Sequence
UGAAAAA
Length
7 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1QFQ_002 not in the Motif Atlas
Geometric match to HL_8C3A_054
Geometric discrepancy: 0.2036
The information below is about HL_8C3A_054
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_71121.1
Basepair signature
cWW-F
Number of instances in this motif group
24

Unit IDs

1QFQ|2|A|U|5
1QFQ|2|A|G|6
1QFQ|2|A|A|7
1QFQ|2|A|A|8
1QFQ|2|A|A|9
1QFQ|2|A|A|10
1QFQ|2|A|A|11

Current chains

Chain A
15-mer nutRboxB RNA hairpin

Nearby chains

Chain B
36-mer N-terminal peptide of the N protein

Coloring options:


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