HL_1QVF_018

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UUUUGAAAAA

Length

10 nucleotides

Bulged bases

1QVF|1|0|A|631

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVF_018 not in the Motif Atlas

Geometric match to HL_4WF9_018

Geometric discrepancy: 0.2126

The information below is about HL_4WF9_018

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_33597.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

96

Unit IDs

1QVF|1|0|U|623
1QVF|1|0|U|624
1QVF|1|0|U|625
1QVF|1|0|U|626
1QVF|1|0|G|627
1QVF|1|0|A|628
1QVF|1|0|A|629
1QVF|1|0|A|630
1QVF|1|0|A|631
1QVF|1|0|A|632

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain K

50S ribosomal protein L15P

Chain X

50S ribosomal protein L32E