HL_1QVF_047

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

UCUAGUAACAA

Length

11 nucleotides

Bulged bases

1QVF|1|0|A|1836, 1QVF|1|0|G|1837, 1QVF|1|0|U|1838, 1QVF|1|0|A|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVF_047 not in the Motif Atlas

Homologous match to HL_4V9F_047

Geometric discrepancy: 0.0541

The information below is about HL_4V9F_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

1QVF|1|0|U|1833
1QVF|1|0|C|1834
1QVF|1|0|U|1835
1QVF|1|0|A|1836
1QVF|1|0|G|1837
1QVF|1|0|U|1838
1QVF|1|0|A|1839
1QVF|1|0|A|1840
1QVF|1|0|C|1841
1QVF|1|0|A|1842
1QVF|1|0|A|1843

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain A

50S ribosomal protein L2P

Chain Z

50S ribosomal protein L37e