3D structure

PDB id
1QVF (explore in PDB, NAKB, or RNA 3D Hub)
Description
Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CUGAACGCAUCUAAG
Length
15 nucleotides
Bulged bases
1QVF|1|0|G|2786, 1QVF|1|0|C|2790
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1QVF_068 not in the Motif Atlas
Homologous match to HL_4V9F_068
Geometric discrepancy: 0.0256
The information below is about HL_4V9F_068
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_74055.2
Basepair signature
cWW-tWH-cWH-tSH-tHW-tHW-tSW
Number of instances in this motif group
7

Unit IDs

1QVF|1|0|C|2780
1QVF|1|0|U|2781
1QVF|1|0|G|2782
1QVF|1|0|A|2783
1QVF|1|0|A|2784
1QVF|1|0|C|2785
1QVF|1|0|G|2786
1QVF|1|0|C|2787
1QVF|1|0|A|2788
1QVF|1|0|U|2789
1QVF|1|0|C|2790
1QVF|1|0|U|2791
1QVF|1|0|A|2792
1QVF|1|0|A|2793
1QVF|1|0|G|2794

Current chains

Chain 0
23S ribosomal rna

Nearby chains

Chain E
50S ribosomal protein L6P
Chain I
50S ribosomal protein L13P

Coloring options:


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