HL_1QVF_068

3D structure

PDB id

1QVF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of a deacylated tRNA minihelix bound to the E site of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1QVF|1|0|G|2786, 1QVF|1|0|C|2790

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVF_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.0256

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.1

Basepair signature

cWW-tWH-tSH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

11

Unit IDs

1QVF|1|0|C|2780
1QVF|1|0|U|2781
1QVF|1|0|G|2782
1QVF|1|0|A|2783
1QVF|1|0|A|2784
1QVF|1|0|C|2785
1QVF|1|0|G|2786
1QVF|1|0|C|2787
1QVF|1|0|A|2788
1QVF|1|0|U|2789
1QVF|1|0|C|2790
1QVF|1|0|U|2791
1QVF|1|0|A|2792
1QVF|1|0|A|2793
1QVF|1|0|G|2794

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain I

50S ribosomal protein L13P