HL_1QVG_012
3D structure
- PDB id
- 1QVG (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.9 Å
Loop
- Sequence
- GUGACAACC
- Length
- 9 nucleotides
- Bulged bases
- 1QVG|1|0|G|336, 1QVG|1|0|A|337, 1QVG|1|0|C|338
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1QVG_012 not in the Motif Atlas
- Homologous match to HL_4V9F_012
- Geometric discrepancy: 0.0432
- The information below is about HL_4V9F_012
- Detailed Annotation
- T-loop with unstacked turn
- Broad Annotation
- T-loop
- Motif group
- HL_27670.3
- Basepair signature
- cWW-tWH-F-F
- Number of instances in this motif group
- 15
Unit IDs
1QVG|1|0|G|334
1QVG|1|0|U|335
1QVG|1|0|G|336
1QVG|1|0|A|337
1QVG|1|0|C|338
1QVG|1|0|A|339
1QVG|1|0|A|340
1QVG|1|0|C|341
1QVG|1|0|C|342
Current chains
- Chain 0
- 23S ribosomal rna
Nearby chains
- Chain C
- 50S ribosomal protein L4E
- Chain S
- 50S ribosomal protein L24P
- Chain X
- 50S ribosomal protein L32E
Coloring options: