HL_1QVG_016

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCAGAAG

Length

7 nucleotides

Bulged bases

1QVG|1|0|A|497

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_016 not in the Motif Atlas

Homologous match to HL_4V9F_016

Geometric discrepancy: 0.0516

The information below is about HL_4V9F_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

1QVG|1|0|U|493
1QVG|1|0|C|494
1QVG|1|0|A|495
1QVG|1|0|G|496
1QVG|1|0|A|497
1QVG|1|0|A|498
1QVG|1|0|G|499

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain Q

50S ribosomal protein L22P