HL_1QVG_024

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UCCUACAAUA

Length

10 nucleotides

Bulged bases

1QVG|1|0|U|840, 1QVG|1|0|A|844, 1QVG|1|0|U|845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_024 not in the Motif Atlas

Homologous match to HL_4V9F_024

Geometric discrepancy: 0.0471

The information below is about HL_4V9F_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88205.2

Basepair signature

cWW-cWS-tSW-F-F

Number of instances in this motif group

7

Unit IDs

1QVG|1|0|U|837
1QVG|1|0|C|838
1QVG|1|0|C|839
1QVG|1|0|U|840
1QVG|1|0|A|841
1QVG|1|0|C|842
1QVG|1|0|A|843
1QVG|1|0|A|844
1QVG|1|0|U|845
1QVG|1|0|A|846

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain B

50S ribosomal protein L3P

Chain Q

50S ribosomal protein L22P

Chain Z

50S ribosomal protein L37e