HL_1QVG_038

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GCAUCGC

Length

7 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_038 not in the Motif Atlas

Homologous match to HL_4V9F_038

Geometric discrepancy: 0.1404

The information below is about HL_4V9F_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_84085.3

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

17

Unit IDs

1QVG|1|0|G|1557
1QVG|1|0|C|1558
1QVG|1|0|A|1559
1QVG|1|0|U|1561
1QVG|1|0|C|1562
1QVG|1|0|G|1563
1QVG|1|0|C|1564

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E