HL_1QVG_046

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CGCAG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_046 not in the Motif Atlas

Homologous match to HL_4V9F_046

Geometric discrepancy: 0.0595

The information below is about HL_4V9F_046

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_80709.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

1QVG|1|0|C|1808
1QVG|1|0|G|1809
1QVG|1|0|C|1810
1QVG|1|0|A|1811
1QVG|1|0|G|1812

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain O

50S ribosomal protein L19E

Chain T

50S ribosomal protein L24E