Motif HL_80709.5 Version HL_80709.5 of this group appears in releases 4.1 to 4.1
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 1-5 | 4-5 | |||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4ZNP_001 | 4ZNP | 0.2871 | 1 | A | ZMP/ZTP riboswitch | G | 26 | G | 27 | A | 28 | A | 29 | C | 31 | cWW | |
| 2 | HL_9E6Q_044 | 9E6Q | 0.0000 | 0 | 1 | LSU rRNA | C | 1888 | G | 1889 | C | 1890 | A | 1891 | G | 1892 | cWW | |
| 3 | HL_4V9F_046 | 4V9F | 0.0556 | 0 | 0 | LSU rRNA | C | 1808 | G | 1809 | C | 1810 | A | 1811 | G | 1812 | cWW | |
| 4 | HL_8B0X_072 | 8B0X | 0.1218 | 0 | a | LSU rRNA | C | 1754 | G | 1755 | A | 1756 | A | 1757 | G | 1758 | cWW | |
| 5 | HL_9DFE_042 | 9DFE | 0.1192 | 0 | 1A | LSU rRNA | C | 1752 | G | 1753 | C | 1754 | A | 1755 | G | 1756 | cWW | |
| 6 | HL_4WF9_042 | 4WF9 | 0.1482 | 0 | X | LSU rRNA | C | 1779 | G | 1780 | C | 1781 | A | 1782 | G | 1783 | cWW | |
| 7 | HL_7A0S_044 | 7A0S | 0.1471 | 0 | X | LSU rRNA | C | 1743 | G | 1744 | C | 1745 | A | 1746 | G | 1747 | cWW | |
| 8 | HL_3IVK_002 | 3IVK | 0.2679 | 0 | M | class I ligase product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 9 | HL_3HHN_007 | 3HHN | 0.2933 | 0 | E | Class I ligase ribozyme, self-ligation product | C | 40 | G | 41 | A | 42 | A | 43 | G | 44 | cWW | |
| 10 | HL_5MGA_001 | 5MGA | 0.5478 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | G | -9 | U | -8 | G | -6 | cWW | |
| 11 | HL_5XH7_001 | 5XH7 | 0.7218 | 1 | B | crRNA | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | |
| 12 | HL_5KK5_001 | 5KK5 | 0.8310 | 1 | B | RNA (40-MER) | C | -11 | U | -10 | C | -9 | U | -8 | G | -6 | cWW | ncWS |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CGCAG | 5 |
| CGAAG | 3 |
| CUCUUG | 2 |
| GGAAAC | 1 |
| CUGUUG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| GCA | 5 |
| GAA | 3 |
| UCUU | 2 |
| GAAA | 1 |
| UGUU | 1 |
Release history
| Release | 4.1 |
|---|---|
| Date | 2025-09-10 |
| Status | Updated, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- (12)
- Basepair signature
- cWW-F-F-F
- Heat map statistics
- Min 0.06 | Avg 0.41 | Max 0.99
Coloring options: