HL_1QVG_059

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

UUCCCAACGAG

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_059 not in the Motif Atlas

Homologous match to HL_4V9F_059

Geometric discrepancy: 0.0428

The information below is about HL_4V9F_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91939.2

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

8

Unit IDs

1QVG|1|0|U|2389
1QVG|1|0|U|2390
1QVG|1|0|C|2391
1QVG|1|0|C|2392
1QVG|1|0|C|2393
1QVG|1|0|A|2394
1QVG|1|0|A|2395
1QVG|1|0|C|2396
1QVG|1|0|G|2397
1QVG|1|0|A|2398
1QVG|1|0|G|2399

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 2

50S ribosomal protein L44E

Chain K

50S ribosomal protein L15P

Chain P

50S ribosomal protein L21e