HL_1QVG_064

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

GUUGUUCGC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_064 not in the Motif Atlas

Geometric match to HL_4WF9_041

Geometric discrepancy: 0.3999

The information below is about HL_4WF9_041

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_65167.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

16

Unit IDs

1QVG|1|0|G|2585
1QVG|1|0|U|2586
1QVG|1|0|U|2587
1QVG|1|0|G|2588
1QVG|1|0|U|2589
1QVG|1|0|U|2590
1QVG|1|0|C|2591
1QVG|1|0|G|2592
1QVG|1|0|C|2593

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain 5

Oligonucleotide CCA

Chain B

50S ribosomal protein L3P

Chain J

50S ribosomal protein L14P