HL_1QVG_068

3D structure

PDB id

1QVG (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of CCA oligonucleotide bound to the tRNA binding sites of the large ribosomal subunit of Haloarcula marismortui

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUGAACGCAUCUAAG

Length

15 nucleotides

Bulged bases

1QVG|1|0|G|2786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1QVG_068 not in the Motif Atlas

Homologous match to HL_4V9F_068

Geometric discrepancy: 0.039

The information below is about HL_4V9F_068

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

1QVG|1|0|C|2780
1QVG|1|0|U|2781
1QVG|1|0|G|2782
1QVG|1|0|A|2783
1QVG|1|0|A|2784
1QVG|1|0|C|2785
1QVG|1|0|G|2786
1QVG|1|0|C|2787
1QVG|1|0|A|2788
1QVG|1|0|U|2789
1QVG|1|0|C|2790
1QVG|1|0|U|2791
1QVG|1|0|A|2792
1QVG|1|0|A|2793
1QVG|1|0|G|2794

Current chains

Chain 0

23S ribosomal rna

Nearby chains

Chain E

50S ribosomal protein L6P

Chain I

50S ribosomal protein L13P