HL_1S34_009

3D structure

PDB id

1S34 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Solution structure of residues 907-929 from Rous Sarcoma Virus

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

UUUGUA

Length

6 nucleotides

Bulged bases

1S34|9|A|U|920

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1S34_009 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.216

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.9

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1S34|9|A|U|916
1S34|9|A|U|917
1S34|9|A|U|918
1S34|9|A|G|919
1S34|9|A|U|920
1S34|9|A|A|921

Current chains

Chain A

5'-R(*GP*GP*GP*GP*AP*GP*UP*GP*GP*UP*UP*UP*GP*UP*AP*UP*CP*CP*UP*UP*CP*CP*C)-3'

Nearby chains