HL_1S72_047

3D structure

PDB id

1S72 (explore in PDB, NAKB, or RNA 3D Hub)

Description

REFINED CRYSTAL STRUCTURE OF THE HALOARCULA MARISMORTUI LARGE RIBOSOMAL SUBUNIT AT 2.4 ANGSTROM RESOLUTION

Experimental method

X-RAY DIFFRACTION

Resolution

2.4 Å

Loop

Sequence

UCUAGUAACAA

Length

11 nucleotides

Bulged bases

1S72|1|0|A|1836, 1S72|1|0|G|1837, 1S72|1|0|U|1838, 1S72|1|0|A|1842

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85534.6

Basepair signature

cWW-tWH-tWH-R

Number of instances in this motif group

9

Unit IDs

1S72|1|0|U|1833
1S72|1|0|C|1834
1S72|1|0|U|1835
1S72|1|0|A|1836
1S72|1|0|G|1837
1S72|1|0|U|1838
1S72|1|0|A|1839
1S72|1|0|A|1840
1S72|1|0|C|1841
1S72|1|0|A|1842
1S72|1|0|A|1843

Current chains

Chain 0

23S ribosomal RNA

Nearby chains

Chain 1

50S ribosomal protein L37e

Chain A

50S ribosomal protein L2P