Motif HL_85534.6 Version HL_85534.6 of this group appears in releases 1.18 to 1.18
| #S | Loop id | PDB | Disc | #Non-core | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 1-7 | 2-6 | 3-5 | |||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_3U5H_046 | 3U5H | 0.1821 | 4 | 5 | 25S rRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | tWH | tWH |
| 2 | HL_4CUV_046 | 4CUV | 0.1399 | 4 | 1 | 25S RRNA | U | 2135 | C | 2136 | U | 2137 | U | 2141 | A | 2142 | A | 2143 | A | 2145 | cWW | ntWH | ntWH |
| 3 | HL_4QCN_043 | 4QCN | 0.1128 | 4 | A | 23S Ribosomal RNA | U | 1808 | U | 1809 | U | 1810 | A | 1814 | A | 1815 | A | 1816 | A | 1818 | cWW | tWH | tWH |
| 4 | HL_1VW3_032 | 1VW3 | 0.0833 | 4 | A | 21S ribosomal RNA | U | 1684 | U | 1685 | U | 1686 | A | 1690 | A | 1691 | A | 1692 | A | 1694 | cWW | tWH | tWH |
| 5 | HL_1VX6_046 | 1VX6 | 0.0000 | 4 | A | 28S ribosomal RNA | U | 2428 | U | 2429 | U | 2430 | U | 2434 | A | 2435 | A | 2436 | A | 2438 | cWW | tWH | tWH |
| 6 | HL_1S72_047 | 1S72 | 0.4569 | 4 | 0 | LSU rRNA | U | 1833 | C | 1834 | U | 1835 | A | 1839 | A | 1840 | C | 1841 | A | 1843 | cWW | tWH | |
| 7 | HL_4A1B_045 | 4A1B | 0.4123 | 4 | 1 | 26S RRNA | U | 2131 | U | 2132 | U | 2133 | A | 2137 | A | 2138 | A | 2139 | A | 2141 | cWW | tWH | |
| 8 | HL_2QBG_047 | 2QBG | 0.4322 | 4 | B | 23S rRNA | U | 1777 | U | 1778 | U | 1779 | A | 1783 | A | 1784 | A | 1785 | A | 1787 | cWW | tWH | |
| 9 | HL_4W21_046 | 4W21 | 0.4513 | 4 | 5 | 28S ribosomal RNA | U | 3639 | U | 3640 | U | 3641 | U | 3645 | A | 3646 | A | 3647 | A | 3649 | cWW | tWH |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| UCUAAUUAAAA | 2 |
| UUUAAUUAAAA | 2 |
| UUUACCAAAAA | 1 |
| UUUACUAAAAA | 1 |
| UCUAGUAACAA | 1 |
| UUUAAUAAAAA | 1 |
| UUUAUUAAAAA | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| CUAAUUAAA | 2 |
| UUAAUUAAA | 2 |
| UUACCAAAA | 1 |
| UUACUAAAA | 1 |
| CUAGUAACA | 1 |
| UUAAUAAAA | 1 |
| UUAUUAAAA | 1 |
Release history
| Release | 1.18 |
|---|---|
| Date | 2014-10-09 |
| Status | Updated, 1 parent |
Parent motifs
| Parent motif | Common motif instances | Only in HL_85534.6 | Only in the parent motif |
|---|---|---|---|
| HL_85534.5 Compare | HL_3U5H_046, HL_1S72_047, HL_4CUV_046, HL_4A1B_045, HL_1VW3_032, HL_1VX6_046, HL_2QBG_047, HL_4QCN_043 | HL_4W21_046 | HL_1VWW_046 |
Children motifs
This motif has no children motifs.- Annotations
-
- (9)
- Basepair signature
- cWW-tWH-tWH-R
- Heat map statistics
- Min 0.08 | Avg 0.28 | Max 0.49
Coloring options: