HL_1SJ4_001

3D structure

PDB id

1SJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

1SJ4|1|R|U|123, 1SJ4|1|R|C|126, 1SJ4|1|R|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SJ4_001 not in the Motif Atlas

Geometric match to HL_4PRF_001

Geometric discrepancy: 0.2923

The information below is about HL_4PRF_001

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_37671.1

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1SJ4|1|R|C|119
1SJ4|1|R|U|120
1SJ4|1|R|C|121
1SJ4|1|R|C|122
1SJ4|1|R|U|123
1SJ4|1|R|C|124
1SJ4|1|R|G|125
1SJ4|1|R|C|126
1SJ4|1|R|U|127
1SJ4|1|R|G|128

Current chains

Chain R

precursor form of the Hepatitis Delta virus ribozyme

Nearby chains