HL_1SJ4_002

3D structure

PDB id

1SJ4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of a C75U mutant Hepatitis Delta Virus ribozyme precursor, in Cu2+ solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.7 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SJ4_002 not in the Motif Atlas

Geometric match to HL_4PRF_002

Geometric discrepancy: 0.0576

The information below is about HL_4PRF_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_31581.6

Basepair signature

cWW-cHS-F-F-F-cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1SJ4|1|R|C|147
1SJ4|1|R|A|148
1SJ4|1|R|U|149
1SJ4|1|R|U|150
1SJ4|1|R|G|151
1SJ4|1|R|C|152
1SJ4|1|R|A|153
1SJ4|1|R|C|154
1SJ4|1|R|U|155
1SJ4|1|R|C|156
1SJ4|1|R|C|157
1SJ4|1|R|G|158

Current chains

Chain R

precursor form of the Hepatitis Delta virus ribozyme

Nearby chains

Chain P

small nuclear ribonucleoprotein A