HL_1SM1_001
3D structure
- PDB id
- 1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.42 Å
Loop
- Sequence
- CGAUUACCUG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1SM1_001 not in the Motif Atlas
- Homologous match to HL_4WF9_067
- Geometric discrepancy: 0.5919
- The information below is about HL_4WF9_067
- Detailed Annotation
- Pseudoknot with intercalation
- Broad Annotation
- No text annotation
- Motif group
- HL_93438.2
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Number of instances in this motif group
- 6
Unit IDs
1SM1|1|0|C|58
1SM1|1|0|G|59
1SM1|1|0|A|60
1SM1|1|0|U|61
1SM1|1|0|U|62
1SM1|1|0|A|63
1SM1|1|0|C|64
1SM1|1|0|C|65
1SM1|1|0|U|66
1SM1|1|0|G|67
Current chains
- Chain 0
- 23S RIBOSOMAL RNA
Nearby chains
- Chain R
- 50S RIBOSOMAL PROTEIN L23
- Chain W
- 50S RIBOSOMAL PROTEIN L29
Coloring options: