Motif HL_17803.1 Version HL_17803.1 of this group appears in releases 4.0 to 4.0
| #S | Loop id | PDB | Disc | #Non-core | Annotation | Chain(s) | Standardized name for chain | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9 | 10 | 1-10 | 5-6 | 5-7 | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| 1 | HL_4WF9_067 | 4WF9 | 0.2257 | 0 | Pseudoknot with intercalation | X | LSU rRNA | U | 59 | U | 60 | A | 61 | C | 62 | U | 63 | A | 64 | A | 65 | C | 66 | G | 67 | A | 68 | cWW | ncSH | |
| 2 | HL_7A0S_001 | 7A0S | 0.1696 | 0 | Pseudoknot with intercalation | X | LSU rRNA | C | 58 | G | 59 | A | 60 | U | 61 | U | 62 | A | 63 | C | 64 | C | 65 | U | 66 | G | 67 | cWW | cSH | |
| 3 | HL_9DFE_001 | 9DFE | 0.1467 | 0 | Pseudoknot with intercalation (H) | 1A | LSU rRNA | U | 59 | G | 60 | G | 61 | C | 62 | U | 63 | A | 64 | C | 65 | C | 66 | U | 67 | G | 68 | cWW | cSH | |
| 4 | HL_4V9F_001 | 4V9F | 0.0000 | 0 | Pseudoknot with intercalation | 0 | LSU rRNA | U | 55 | G | 56 | C | 57 | C | 58 | A | 59 | A | 60 | G | 61 | C | 62 | U | 63 | G | 64 | cWW | cSH | |
| 5 | HL_9E6Q_001 | 9E6Q | 0.1296 | 0 | Pseudoknot with intercalation (H) | 1 | LSU rRNA | U | 51 | G | 52 | G | 53 | C | 54 | A | 55 | A | 56 | G | 57 | C | 58 | U | 59 | G | 60 | cWW | ncSH | ncSH |
| 6 | HL_9AXU_071 | 9AXU | 0.2449 | 0 | Pseudoknot with intercalation (H) | 4 | 5.8S rRNA | C | 55 | A | 56 | G | 57 | C | 58 | G | 59 | A | 60 | A | 61 | A | 62 | U | 63 | G | 64 | cWW | ||
| 7 | HL_8OI5_071 | 8OI5 | 0.2639 | 0 | Pseudoknot with intercalation (H) | 4 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | ||
| 8 | HL_8P9A_186 | 8P9A | 0.3127 | 0 | Pseudoknot with intercalation (H) | AT | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | G | 51 | A | 52 | A | 53 | A | 54 | U | 55 | G | 56 | cWW | ||
| 9 | HL_8GLP_078 | 8GLP | 0.2978 | 0 | L8 | 5.8S rRNA | C | 47 | A | 48 | G | 49 | C | 50 | U | 51 | A | 52 | G | 53 | C | 54 | PSU | 55 | G | 56 | cWW |
3D structures
Complete motif including flanking bases
| Sequence | Counts |
|---|---|
| CAGCGAAAUG | 3 |
| UUACUAACGA | 1 |
| CGAUUACCUG | 1 |
| UGGCUACCUG | 1 |
| UGCCAAGCUG | 1 |
| UGGCAAGCUG | 1 |
| CAGCUAGCG | 1 |
Non-Watson-Crick part of the motif
| Sequence | Counts |
|---|---|
| AGCGAAAU | 3 |
| UACUAACG | 1 |
| GAUUACCU | 1 |
| GGCUACCU | 1 |
| GCCAAGCU | 1 |
| GGCAAGCU | 1 |
| AGCUAGC(PSU) | 1 |
Release history
| Release | 4.0 |
|---|---|
| Date | 2025-08-13 |
| Status | New id, 1 parent |
Parent motifs
This motif has no parent motifs.
Children motifs
This motif has no children motifs.- Annotations
-
- Pseudoknot with intercalation (H) (5)
- Pseudoknot with intercalation (3)
- (1)
- Basepair signature
- cWW-F-F-F-F-F-F-F-F
- Heat map statistics
- Min 0.09 | Avg 0.24 | Max 0.42
Coloring options: