HL_1SM1_009

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUGGAAAG

Length

8 nucleotides

Bulged bases

1SM1|1|0|A|322

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_009 not in the Motif Atlas

Homologous match to HL_7A0S_010

Geometric discrepancy: 0.3878

The information below is about HL_7A0S_010

Detailed Annotation

T-loop with 1 bulged base

Broad Annotation

T-loop

Motif group

HL_01609.3

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

18

Unit IDs

1SM1|1|0|C|316
1SM1|1|0|U|317
1SM1|1|0|G|318
1SM1|1|0|G|319
1SM1|1|0|A|320
1SM1|1|0|A|321
1SM1|1|0|A|322
1SM1|1|0|G|323

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain Q

50S RIBOSOMAL PROTEIN L22

Chain S

50S RIBOSOMAL PROTEIN L24