HL_1SM1_016

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CCUUAUGCG

Length

9 nucleotides

Bulged bases

1SM1|1|0|U|554, 1SM1|1|0|U|555, 1SM1|1|0|A|556, 1SM1|1|0|U|557, 1SM1|1|0|G|558

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_016 not in the Motif Atlas

Geometric match to HL_2Y8W_001

Geometric discrepancy: 0.373

The information below is about HL_2Y8W_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40612.1

Basepair signature

cWW

Number of instances in this motif group

3

Unit IDs

1SM1|1|0|C|552
1SM1|1|0|C|553
1SM1|1|0|U|554
1SM1|1|0|U|555
1SM1|1|0|A|556
1SM1|1|0|U|557
1SM1|1|0|G|558
1SM1|1|0|C|559
1SM1|1|0|G|560

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain P

50S RIBOSOMAL PROTEIN L21