3D structure

PDB id
1SM1 (explore in PDB, NAKB, or RNA 3D Hub)
Description
COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN
Experimental method
X-RAY DIFFRACTION
Resolution
3.42 Å

Loop

Sequence
UAACUAUAA
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_1SM1_047 not in the Motif Atlas
Geometric match to HL_5TBW_044
Geometric discrepancy: 0.2917
The information below is about HL_5TBW_044
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_81100.1
Basepair signature
cWW
Number of instances in this motif group
4

Unit IDs

1SM1|1|0|U|1894
1SM1|1|0|A|1895
1SM1|1|0|A|1896
1SM1|1|0|C|1897
1SM1|1|0|U|1898
1SM1|1|0|A|1899
1SM1|1|0|U|1900
1SM1|1|0|A|1901
1SM1|1|0|A|1902

Current chains

Chain 0
23S RIBOSOMAL RNA

Nearby chains

Chain T
GENERAL STRESS PROTEIN CTC

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 0.1153 s