HL_1SM1_047

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

UAACUAUAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_047 not in the Motif Atlas

Geometric match to HL_5TBW_044

Geometric discrepancy: 0.2917

The information below is about HL_5TBW_044

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81100.1

Basepair signature

cWW

Number of instances in this motif group

4

Unit IDs

1SM1|1|0|U|1894
1SM1|1|0|A|1895
1SM1|1|0|A|1896
1SM1|1|0|C|1897
1SM1|1|0|U|1898
1SM1|1|0|A|1899
1SM1|1|0|U|1900
1SM1|1|0|A|1901
1SM1|1|0|A|1902

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain T

GENERAL STRESS PROTEIN CTC