HL_1SM1_054

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGCAAAGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_054 not in the Motif Atlas

Geometric match to HL_7A0S_055

Geometric discrepancy: 0.1693

The information below is about HL_7A0S_055

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

1SM1|1|0|C|2303
1SM1|1|0|G|2304
1SM1|1|0|C|2305
1SM1|1|0|A|2306
1SM1|1|0|A|2307
1SM1|1|0|A|2308
1SM1|1|0|G|2309
1SM1|1|0|G|2310

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain U

50S RIBOSOMAL PROTEIN L27