HL_1SM1_057

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CGUGUGGAAG

Length

10 nucleotides

Bulged bases

1SM1|1|0|U|2385

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_057 not in the Motif Atlas

Homologous match to HL_7A0S_058

Geometric discrepancy: 0.2196

The information below is about HL_7A0S_058

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_51853.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

1SM1|1|0|C|2383
1SM1|1|0|G|2384
1SM1|1|0|U|2385
1SM1|1|0|G|2386
1SM1|1|0|U|2387
1SM1|1|0|G|2388
1SM1|1|0|G|2389
1SM1|1|0|A|2390
1SM1|1|0|A|2391
1SM1|1|0|G|2392

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain J

50S RIBOSOMAL PROTEIN L15

Chain Y

50S RIBOSOMAL PROTEIN L31