HL_1SM1_064

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

1SM1|1|0|G|2731, 1SM1|1|0|C|2735, 1SM1|1|0|A|2737

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_064 not in the Motif Atlas

Homologous match to HL_7A0S_065

Geometric discrepancy: 0.5849

The information below is about HL_7A0S_065

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53269.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

10

Unit IDs

1SM1|1|0|C|2725
1SM1|1|0|U|2726
1SM1|1|0|G|2727
1SM1|1|0|A|2728
1SM1|1|0|A|2729
1SM1|1|0|A|2730
1SM1|1|0|G|2731
1SM1|1|0|C|2732
1SM1|1|0|A|2733
1SM1|1|0|U|2734
1SM1|1|0|C|2735
1SM1|1|0|U|2736
1SM1|1|0|A|2737
1SM1|1|0|A|2738
1SM1|1|0|G|2739

Current chains

Chain 0

23S RIBOSOMAL RNA

Nearby chains

Chain 4

50S RIBOSOMAL PROTEIN L36

Chain E

50S RIBOSOMAL PROTEIN L6

Chain H

50S RIBOSOMAL PROTEIN L13