HL_1SM1_068

3D structure

PDB id

1SM1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

COMPLEX OF THE LARGE RIBOSOMAL SUBUNIT FROM DEINOCOCCUS RADIODURANS WITH QUINUPRISTIN AND DALFOPRISTIN

Experimental method

X-RAY DIFFRACTION

Resolution

3.42 Å

Loop

Sequence

CACCCCAUGCCGAACUG

Length

17 nucleotides

Bulged bases

1SM1|1|9|C|37, 1SM1|1|9|C|38, 1SM1|1|9|G|43

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1SM1_068 not in the Motif Atlas

Geometric match to HL_2ZNI_001

Geometric discrepancy: 0.1134

The information below is about HL_2ZNI_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.5

Basepair signature

cWW-F

Number of instances in this motif group

19

Unit IDs

1SM1|1|9|C|35
1SM1|1|9|A|36
1SM1|1|9|C|37
1SM1|1|9|C|38
1SM1|1|9|C|39
1SM1|1|9|C|40
1SM1|1|9|A|41
1SM1|1|9|U|42
1SM1|1|9|G|43
1SM1|1|9|C|44
1SM1|1|9|C|45
1SM1|1|9|G|46
1SM1|1|9|A|47
1SM1|1|9|A|48
1SM1|1|9|C|49
1SM1|1|9|U|50
1SM1|1|9|G|51

Current chains

Chain 9

5S RIBOSOMAL RNA

Nearby chains

Chain 0

Large subunit ribosomal RNA; LSU rRNA

Chain D

50S RIBOSOMAL PROTEIN L5

Chain M

50S RIBOSOMAL PROTEIN L18