#SLoop idPDBDisc#Non-coreChain(s)Standardized name for chain 1 2 31-3
1 HL_4V9F_0034V9F0.389920 LSU rRNAG118A119C122cWW
2 HL_2Y9H_0032Y9H0.23203FRNA (19-mer)C11G12G16cWW
3 HL_1WZ2_0071WZ20.23403DtRNAC950G951G955cWW
4 HL_9E6Q_0679E6Q0.254841 LSU rRNAG2979G2980C2985cWW
5 HL_7KI3_0017KI30.20303CHCV genotype 1a miR-122 site-1C10U11G15cWW
6 HL_8G9Z_0018G9Z0.11923ESelenocysteine transfer RNAG15||AU16||AC20||A|AcWW
7 HL_4WF9_0034WF90.12603X LSU rRNAG122G123C127cWW
8 HL_5U3G_0015U3G0.11383BGuanidine-I riboswitchC18G19G23cWW
9 HL_8OI5_0068OI50.091021 LSU rRNAC207A208G211cWW
10 HL_8P9A_1188P9A0.08152AR LSU rRNAC208A209G212cWW
11 HL_4V9F_0114V9F0.090820 LSU rRNAG326A327C330cWW
12 HL_7A0S_0117A0S0.11852X LSU rRNAC330U331G334cWW
13 HL_9E6Q_0119E6Q0.127221 LSU rRNAC347G348G351cWW
14 HL_9DFE_0109DFE0.094421A LSU rRNAC319A320G323cWW
15 HL_4WF9_0114WF90.11992X LSU rRNAC362A363G366cWW
16 HL_8B0X_0428B0X0.09872a LSU rRNAG319A320C323cWW
17 HL_9AXU_0069AXU0.000022 LSU rRNAC215A216G219cWW
18 HL_8GLP_0068GLP0.06152L5 LSU rRNAC222G223G226cWW
19 HL_2ZNI_0012ZNI0.14684Cbacterial tRNAC13G14G21cWW
20 HL_8K0Y_0018K0Y0.13863AMALAT1-associated small cytoplasmic RNA/MEN beta RNAG10G11C15cWW
21 HL_9E6Q_0039E6Q0.167431 LSU rRNAG114G115C119cWW
22 HL_8KAL_0038KAL0.35102A tracrRNAG87A88C91cWW

3D structures

Complete motif including flanking bases
SequenceCounts
GAUAC2
CAGAG2
GAAUC1
CGCGUG1
CGUAGG1
GGUUUCC1
CUGAUG1
GUGGUC1
GGAAAC1
CGAAAG1
CACAG1
CAUAG1
CUCAG1
CGUAG1
CAAAG1
CGUGG1
CGAAUAG1
GGUGGC1
GGCUUC1
GAGUC1
Non-Watson-Crick part of the motif
SequenceCounts
AUA3
GAAA2
AGA2
AAU1
GCGU1
GUAG1
GUUUC1
UGAU1
UGGU1
ACA1
UCA1
GUA1
AAA1
GUG1
GAAUA1
GUGG1
GCUU1
AGU1

Release history

Release4.1
Date2025-09-10
StatusUpdated, 1 parent

Parent motifs

This motif has no parent motifs.

Children motifs

This motif has no children motifs.
Annotations
  • (22)
  • Basepair signature
    cWW-F
    Heat map statistics
    Min 0.06 | Avg 0.21 | Max 0.51
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