HL_1TLR_002

3D structure

PDB id

1TLR (explore in PDB, NAKB, or RNA 3D Hub)

Description

SOLUTION STRUCTURE OF TETRALOOP RECEPTOR RNA, NMR, 20 STRUCTURES

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CUUCGG

Length

6 nucleotides

Bulged bases

1TLR|2|A|U|12, 1TLR|2|A|C|13

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1TLR_002 not in the Motif Atlas

Geometric match to HL_8HNT_002

Geometric discrepancy: 0.2574

The information below is about HL_8HNT_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56676.1

Basepair signature

cWW-F-F

Number of instances in this motif group

2

Unit IDs

1TLR|2|A|C|10
1TLR|2|A|U|11
1TLR|2|A|U|12
1TLR|2|A|C|13
1TLR|2|A|G|14
1TLR|2|A|G|15

Current chains

Chain A

RNA TETRALOOP RECEPTOR (5'-R(GGCCUAAGACUUCGGUUAUGGCC)-3')

Nearby chains