HL_1TN2_004

3D structure

PDB id

1TN2 (explore in PDB, NAKB, or RNA 3D Hub)

Description

CRYSTALLOGRAPHIC AND BIOCHEMICAL INVESTIGATION OF THE LEAD(II)-CATALYZED HYDROLYSIS OF YEAST PHENYLALANINE T-RNA

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

A(OMC)U(OMG)AA(YG)A(PSU)

Length

9 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: OMC, OMG, YG, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1TN2_004 not in the Motif Atlas

Homologous match to HL_4V9I_039

Geometric discrepancy: 0.223

The information below is about HL_4V9I_039

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_06059.7

Basepair signature

cWW-F-F-F-F-F-F-F

Number of instances in this motif group

51

Unit IDs

1TN2|1|A|A|31
1TN2|1|A|OMC|32
1TN2|1|A|U|33
1TN2|1|A|OMG|34
1TN2|1|A|A|35
1TN2|1|A|A|36
1TN2|1|A|YG|37
1TN2|1|A|A|38
1TN2|1|A|PSU|39

Current chains

Chain A

TRNAPHE

Nearby chains