HL_4V9I_039

3D structure

PDB id

4V9I (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of thermus thermophilus 70S in complex with tRNAs and mRNA containing a pseudouridine in a stop codon

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCUCGAAAA

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

tRNA anticodon loop

Broad Annotation

Anticodon loop

Motif group

HL_53597.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

31

Unit IDs

4V9I|1|AY|U|31
4V9I|1|AY|C|32
4V9I|1|AY|U|33
4V9I|1|AY|C|34
4V9I|1|AY|G|35
4V9I|1|AY|A|36
4V9I|1|AY|A|37
4V9I|1|AY|A|38
4V9I|1|AY|A|39

Current chains

Chain AY

A-SITE tRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain AL

30S Ribosomal protein S12

Chain AM

30S Ribosomal protein S13

Chain AX

mRNA

Chain BA

Large subunit ribosomal RNA; LSU rRNA