HL_1URN_003

3D structure

PDB id

1URN (explore in PDB, NAKB, or RNA 3D Hub)

Description

U1A MUTANT/RNA COMPLEX + GLYCEROL

Experimental method

X-RAY DIFFRACTION

Resolution

1.92 Å

Loop

Sequence

CAUUGCACG

Length

9 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1URN_003 not in the Motif Atlas

Geometric match to HL_5TBW_006

Geometric discrepancy: 0.1136

The information below is about HL_5TBW_006

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1URN|1|R|C|5
1URN|1|R|A|6
1URN|1|R|U|7
1URN|1|R|U|8
1URN|1|R|G|9
1URN|1|R|C|10
1URN|1|R|A|11
1URN|1|R|C|12
1URN|1|R|G|16

Current chains

Chain R

RNA (5'-R(*AP*AP*UP*CP*CP*AP*UP*UP*GP*CP*AP*CP*UP*CP*CP*GP*G P*AP*UP*UP*U)-3')

Nearby chains

Chain B

PROTEIN (U1A)

Chain C

PROTEIN (U1A)