HL_1UUD_001

3D structure

PDB id

1UUD (explore in PDB, NAKB, or RNA 3D Hub)

Description

NMR structure of a synthetic small molecule, rbt203, bound to HIV-1 TAR RNA

Experimental method

SOLUTION NMR

Resolution

Loop

Sequence

CCUGGGAG

Length

8 nucleotides

Bulged bases

1UUD|1|B|U|31, 1UUD|1|B|G|32

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1UUD_001 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.3964

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

1UUD|1|B|C|29
1UUD|1|B|C|30
1UUD|1|B|U|31
1UUD|1|B|G|32
1UUD|1|B|G|33
1UUD|1|B|G|34
1UUD|1|B|A|35
1UUD|1|B|G|36

Current chains

Chain B

RNA (5'-(*GP*GP*CP*AP*GP*AP*UP*CP*UP*GP*AP*GP *CP*CP*UP*GP*GP*GP*AP*GP*CP*UP*CP*UP*CP*UP*GP*CP*C) -3')

Nearby chains