HL_1VBX_002
3D structure
- PDB id
- 1VBX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in EDTA solution
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 2.7 Å
Loop
- Sequence
- CAUUGCACUCCG
- Length
- 12 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_1VBX_002 not in the Motif Atlas
- Geometric match to HL_4PRF_002
- Geometric discrepancy: 0.0618
- The information below is about HL_4PRF_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_99373.1
- Basepair signature
- cWW-F-F-F-cSH-F-F-F-F
- Number of instances in this motif group
- 3
Unit IDs
1VBX|1|B|C|147
1VBX|1|B|A|148
1VBX|1|B|U|149
1VBX|1|B|U|150
1VBX|1|B|G|151
1VBX|1|B|C|152
1VBX|1|B|A|153
1VBX|1|B|C|154
1VBX|1|B|U|155
1VBX|1|B|C|156
1VBX|1|B|C|157
1VBX|1|B|G|158
Current chains
- Chain B
- Hepatitis Delta virus ribozyme
Nearby chains
- Chain A
- U1 small nuclear ribonucleoprotein A
Coloring options: