HL_1VBY_001

3D structure

PDB id

1VBY (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, and Mn2+ bound

Experimental method

X-RAY DIFFRACTION

Resolution

2.9 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

1VBY|1|B|U|123, 1VBY|1|B|C|126, 1VBY|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_49210.1

Basepair signature

cWW-R-R-R-R

Number of instances in this motif group

2

Unit IDs

1VBY|1|B|C|119
1VBY|1|B|U|120
1VBY|1|B|C|121
1VBY|1|B|C|122
1VBY|1|B|U|123
1VBY|1|B|C|124
1VBY|1|B|G|125
1VBY|1|B|C|126
1VBY|1|B|U|127
1VBY|1|B|G|128

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains