Motif HL_49210.1 Version HL_49210.1 of this group appears in releases 0.3 to 2.0

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Pairwise interactions
Sequence variants
History

#S	Loop id	PDB	Disc	#Non-core	Annotation	Chain(s)	Standardized name		1		2		3		4		5		6		7	1-7	2-6
1	HL_3NKB_001	3NKB	0.0000	2	Pseudoknot	B	Hepatitis delta virus ribozyme	C	20	U	21	C	22	C	23	C	25	G	26	G	28	cWW	tWW
2	HL_1VBY_001	1VBY	0.5258	3		B	Hepatitis Delta virus ribozyme	C	119	U	120	C	121	C	122	C	124	G	125	G	128	cWW

3D structures

Complete motif including flanking bases

Sequence	Counts
CUCCUCGCG	1
CUCCUCGCUG	1

Non-Watson-Crick part of the motif

Sequence	Counts
UCCUCGC	1
UCCUCGCU	1

Release history

Release	0.3	0.4	0.5	0.6	0.7	0.8	1.0	1.1	1.2	1.3	1.4	1.5	1.6	1.7	1.8	1.9	1.10	1.11	1.12	1.13	1.14	1.15	1.16	1.17	1.18	2.0
Date	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-02-17	2013-03-04	2013-04-06	2013-05-04	2013-06-01	2013-07-03	2013-08-03	2013-08-31	2013-09-28	2013-11-04	2013-12-07	2014-01-04	2014-02-01	2014-03-01	2014-03-29	2014-04-27	2014-06-15	2014-07-26	2014-09-06	2014-10-09	2017-04-24
Status	New id, 2 parents	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match	Exact match

Parent motifs

Parent motif	Common motif instances	Only in HL_49210.1	Only in the parent motif
HL_29052.1 Compare	HL_3NKB_001	HL_1VBY_001
HL_31697.1 Compare	HL_1VBY_001	HL_3NKB_001	HL_3PYO_009

Children motifs

This motif has no children motifs.

Annotations: (1)
Pseudoknot (1)
Basepair signature: cWW-R-R-R-R
Heat map statistics: Min 0.53 | Avg 0.26 | Max 0.53

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Coloring options: Nucleotide numbers

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