HL_1VBZ_001

3D structure

PDB id

1VBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CUCCUCGCUG

Length

10 nucleotides

Bulged bases

1VBZ|1|B|U|123, 1VBZ|1|B|C|126, 1VBZ|1|B|U|127

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VBZ_001 not in the Motif Atlas

Geometric match to HL_4PRF_001

Geometric discrepancy: 0.2789

The information below is about HL_4PRF_001

Detailed Annotation

Pseudoknot

Broad Annotation

No text annotation

Motif group

HL_37671.1

Basepair signature

cWW-tWW-F-F-F

Number of instances in this motif group

3

Unit IDs

1VBZ|1|B|C|119
1VBZ|1|B|U|120
1VBZ|1|B|C|121
1VBZ|1|B|C|122
1VBZ|1|B|U|123
1VBZ|1|B|C|124
1VBZ|1|B|G|125
1VBZ|1|B|C|126
1VBZ|1|B|U|127
1VBZ|1|B|G|128

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains