HL_1VBZ_002

3D structure

PDB id

1VBZ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Hepatitis Delta Virus Gemonic Ribozyme Precursor, with C75U mutaion, in Ba2+ solution

Experimental method

X-RAY DIFFRACTION

Resolution

2.8 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VBZ_002 not in the Motif Atlas

Geometric match to HL_4PRF_002

Geometric discrepancy: 0.0796

The information below is about HL_4PRF_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99373.1

Basepair signature

cWW-F-F-F-cSH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1VBZ|1|B|C|147
1VBZ|1|B|A|148
1VBZ|1|B|U|149
1VBZ|1|B|U|150
1VBZ|1|B|G|151
1VBZ|1|B|C|152
1VBZ|1|B|A|153
1VBZ|1|B|C|154
1VBZ|1|B|U|155
1VBZ|1|B|C|156
1VBZ|1|B|C|157
1VBZ|1|B|G|158

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A