HL_1VC5_002

3D structure

PDB id

1VC5 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the Wild Type Hepatitis Delta Virus Gemonic Ribozyme Precursor, in EDTA solution

Experimental method

X-RAY DIFFRACTION

Resolution

3.4 Å

Loop

Sequence

CAUUGCACUCCG

Length

12 nucleotides

Bulged bases

1VC5|1|B|C|152

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_1VC5_002 not in the Motif Atlas

Geometric match to HL_4PRF_002

Geometric discrepancy: 0.1819

The information below is about HL_4PRF_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_99373.1

Basepair signature

cWW-F-F-F-cSH-F-F-F-F

Number of instances in this motif group

3

Unit IDs

1VC5|1|B|C|147
1VC5|1|B|A|148
1VC5|1|B|U|149
1VC5|1|B|U|150
1VC5|1|B|G|151
1VC5|1|B|C|152
1VC5|1|B|A|153
1VC5|1|B|C|154
1VC5|1|B|U|155
1VC5|1|B|C|156
1VC5|1|B|C|157
1VC5|1|B|G|158

Current chains

Chain B

Hepatitis Delta virus ribozyme

Nearby chains

Chain A

U1 small nuclear ribonucleoprotein A